Al-Huda has set up free clinics at some of its campuses and branches where free medical advice is provided along with free medicines. At Al-Huda, Islamabad Campus, a free clinic facility was established in November 2010. A doctor is available 4 days a week to check patients, provide free medical advice and free medicines to staff, students and listeners who come to the campus. Supervision of ailments, if any, of regular students and staff member is also carried out.

A free clinic facility has also been established in Al-Huda, LalaMusa Branch. A qualified doctor checks patients from afternoon till evening, seven days a week. This facility is available for general public. An adjacent medical store has also been established which facilitates in providing immediate, free medicines to the patients.